10 Best Accounting Software for Amazon Sellers in 2023

The most well-known of these e-commerce sites is Amazon. Amazon sellers should have an accounting system tailored to their individual needs while selling on these marketplaces.

But whatever your level of experience in the business world, you’ll need an array of tools to keep your Amazon business going smoothly.

While many software applications are available, it’s important to know which are useful and which are just gimmicks.

Any Amazon seller who wants to optimize revenues should have accounting management software. The best accounting software for Amazon businesses of all sizes can be found here.

Why Is It Important to Keep Track of Amazon Seller Accounting?

There are many traps to overcome on the road to eCommerce success, just like there are for a conventional firm. Inventories, stock, transportation, and other expenses must be thoroughly understood in any business endeavor.

Amazon sellers may use various accounting tools or software to help them achieve those standards and make the most money possible from each transaction.

Accounting technology is accessible for all businesses, from the simplest start-ups to the largest corporations relocating or enhancing their sales from physical stores to online sales and everything else in between.

Accounting software can help all sizes of businesses. The next reviews showcase the finest allocated accounting software for Amazon sellers.

1. FreshBooks for Amazon Sellers ($15 – $50 Per Month)

FreshBooks is a cloud-based software for SME businesses, including online amazon sellers on Amazon FBA and FBM (FBM) platforms.

FreshBooks’ approach to invoicing, expenditure management, and financial reporting will be appreciated by Amazon sellers seeking supportive features. Small businesses may benefit from the app’s numerous features, making it ideal for them.

The general ledger features provide everything a company needs to get started with accounting, such as the ability to manage sales tax.

Sellers may make and receive payments and track your business’s progress—all in real-time—with this tool.

FreshBooks also has a sophisticated reporting capability that includes common reports like income statements, sales tax summaries, and expenditure reports.

Key Features:

  • Allow your customers to the submissive to recurring bills
  • Generate profit and loss reports for amazon sellers
  • Organize your time effectively
  • Make estimates and proposals
  • Streamlines bank feeds
  • Customized bill and template designs
  • Integrated with several payment gateways like PayPal, GoCardless, and Stripe
  • Available for desktop and mobile applications.

Pros of FreshBooks for Amazon Sellers

FreshBooks offers several compelling advantages for Amazon sellers, making it an excellent choice for managing their accounting and financial needs:

  1. Easy to use: FreshBooks’ user-friendly nature ensures that even sellers without accounting experience can easily navigate the software. Its clean and intuitive interface makes finding and utilizing the necessary features easy.
  2. Cloud-based: Being a cloud-based software, FreshBooks enables Amazon sellers to access their financial data anywhere with an internet connection. This mobility is a significant benefit for sellers who need to track their finances on the go, providing convenience and flexibility.
  3. Integration with Amazon Seller Central: FreshBooks seamlessly integrates with Amazon Seller Central, allowing sellers to import their sales data effortlessly. This integration streamlines the accounting process, saving valuable time and effort, and ensures that the accounting records are consistently up-to-date.
  4. Affordable: FreshBooks offers cost-effective pricing plans tailored to suit various budget ranges, making it an affordable option for Amazon sellers. Sellers can select a plan that aligns with their financial capabilities while still enjoying the benefits of the software.
  5. Free trial: FreshBooks provides a free trial period, allowing Amazon sellers to explore and experience the software before committing. This trial period is advantageous for sellers to evaluate if FreshBooks meets their specific needs and preferences.

Cons of FreshBooks for Amazon Sellers

While FreshBooks offers various benefits for Amazon sellers, there are certain limitations that sellers should consider before adopting the software:

  1. Limited inventory management features: FreshBooks needs comprehensive inventory management functionalities, such as tracking inventory levels, setting reorder points, or generating detailed reports related to inventory. This limitation may be problematic for Amazon sellers, who must closely monitor their inventory levels and make timely restocking decisions.
  2. No multi-currency support: FreshBooks does not provide multi-currency support, which can be problematic for Amazon sellers who conduct transactions in multiple currencies. The absence of this feature may lead to challenges in accurately tracking and managing finances for international sales.
  3. No Amazon-specific features: FreshBooks offers no features specific to Amazon sellers, such as seamless integration with Amazon Seller Central to import sales data or generate reports tailored to Amazon sales. This limitation may require sellers to manually enter data, resulting in additional time and effort spent on accounting tasks.
  4. Limited user capacity: FreshBooks allows only one user per account, which can be restrictive for Amazon sellers with multiple employees or team members involved in managing the finances. This limitation may hinder collaboration and efficiency in financial operations.

2. Wave Accounting (Free)

Wave Accounting is the best option for you if you’re a small business owner seeking free software. And if you don’t have a lot of accounting background, this cloud-based financial management tool is easy to learn and use.

The first step in becoming a professional Amazon seller is to look into effective accounting toolkits that keep track of sales, finances, and cash positions in real-time. Its internal integrations allow you to handle your accounting, bookkeeping, and invoicing in one location.

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Notwithstanding that Wave’s invoicing features make it a very attractive alternative for service-based enterprises, this accounting software for small businesses does have certain restrictions.

As a result, it’s unsuitable for companies that are rapidly expanding or need to upgrade to a more robust plan.

Key Features:

  • Allow Amazon sellers to customize invoices and track them
  • Feature net profit or loss on a single view with a few clicks
  • Easy-to-calculated Tax deductions
  • Seamlessly record monthly financial activities
  • Can access it through mobile.


  • Sync with Amazon seller accounts
  • Convenient to install and function
  • Cost-effective for small businesses and even freelancers
  • Provide many useful reports
  • Ease of use with mobile apps.


  • No app for desktop
  • Inadequate double-entry accountings
  • Potential Amazon sellers will surpass the application.

3. QuickBooks Online ($15 – $150 Per Month)

QuickBooks Online is a perfect cloud-based software for Amazon sellers. They need to increase their web profile but are searching for an accounting system to assist them in growing revenues without owning software or hardware.

QuickBooks Online’s reporting function enables sellers to create thorough information on profit and loss (P&L), inventory expenses, freight, and waste in real-time and with no effort.

The reports include a P&L statement, cash flow, sales, and tax reports that a major seller needs to remain competitive.

Merchants with workers may use QuickBooks Online’s integrated payroll feature for an additional monthly cost.

It’s also worth noting that QuickBooks interfaces with various alternative payroll services, such as Patriot Payroll, OnPay, and Gusto. Large or multi-site merchants may appreciate QuickBooks Online’s wealth of accounting tools.

Key Features:

  • Infinite income and expense tracking
  • Customizable sales taxes for Amazon seller
  • Double-entry accounting
  • Limitless bank and credit card contacts.
  • Dashboard monitoring for cash balances and invoices
  • Has a mobile app and desktop app.


  • Examine your previous payment activities
  • Keep track of your spending
  • Profit evaluation
  • Preparation of tax returns
  • Many third-party app connections are available.
  • Inventory management is available on QuickBooks Online Plus and Advanced
  • Quick and easy to share messages with your Amazon bookkeeper
  • Straightforward to access QuickBooks specialists and digital resources.


  • Monthly plans are more costly than alternatives
  • Each plan has a maximum number of account users
  • Amazon sellers need some experience to get started.

4. Xero ($12 – $15 Per Month)

Xero is a cloud-based accounting software perfect for online businesses, particularly sellers who require an easy-to-use tool capable of managing banking, invoicing, and cash flow monitoring.

Amazon sellers who don’t have a lot of experience with accounting would enjoy Xero’s simplicity of use.

Additionally, Xero offers a comprehensive double-entry accounting solution that integrates smoothly with a seller’s account to give an overview of the seller’s KPI, such as details of expenditures, sales, and shipping).

The dashboard in Xero offers the seller a watchlist that can be populated with expenditure accounts and revenue data.

Online retailers can also easily examine account activity with trending features and instantly reconcile transactions. For sellers to complete account reconciliations, a single mouse click is all it takes.

Key Features:

  • Easy to use with a wide range of Add-ons
  • Personalize your Amazon business experience by integrating Shopify, A2X, Stitch Labs, and other services.
  • Sellers use this tool to produce and submit invoices
  • Delivers real-time financial and transaction reports.
  • Link up with your bank to accelerate Amazon business transactions online.
  • Keep track of your tax returns and file them online.
  • Supported by mobile apps.


  • Monitoring of cash flow and inventories to the fullest for amazon sellers
  • Very simple in both its setup and its operation
  • App integrations to meet a wide range of requirements
  • Selling may be managed on the go with a cloud-based platform.
  • Affordable planning.


  • “Early” tier won’t have enough features for new sellers
  • The quality of the client service needs to be improved
  • Limited tax-preparation options for sole proprietorships
  • No app for desktops is available to download.

5. AccountEdge Pro (From $499 Per Month)

AccountEdge Pro is a renowned cloud-based accounting system rich in double-entry features. It includes important components for managing all-important company processes such as accounts receivable, payable, inventory control, general ledger (GL), and payroll.

The tools and capabilities included in AccountEdge Pro are suitable for small sellers looking to maximize profits. The application provides a comprehensive desktop accounting system for sellers, and there is a cloud alternative that concentrates on the desktop version for sellers.

Sellers can access many basic reports or develop custom reports depending on individual needs. Furthermore, it allows sellers to manage data in the way that best suits their business configuration.

AccountEdge Pro is a low-cost program with a convenient menu system, letting merchants focus on their Amazon-based platform.

Key Features:

  • Amazon sellers can use the online support service during working hours
  • Online invoicing & payment processing for Amazon seller
  • Activity tracking, automatic billing, invoicing, billing portal & hourly billing
  • Accounting accounts payable & receivable
  • Bank reconciliation with tax calculation
  • Multi-currency
  • Quotes or estimates, reminders, reporting & statistics
  • Third-party integrations
  • Accessible through the desktop application.
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  • Assist payroll, inventory & time tracking 
  • Robust banking features & reporting features
  • Inexpensive application, suitable for small-sized amazon seller businesses
  • Support multiple users and departments.


  • Need learning curve
  • The windows interface is obsolete
  • Cannot access it through the mobile app.

6. AccountingSuite ($19 – $129 Per Month)

AccountingSuite is an excellent accounting software solution for any scale of amazon sellers. This cloud-based platform includes all the capabilities a vendor needs to manage inventory, bill consumers, and expand their company.

As an online retailer, you’ll need complete accounting software like AccountingSuite to keep track of your business’s finances.

In addition, it adds capabilities such as powerful reporting, budgeting, inventory management and collaboration that are not included in other programs with a comparable price point to AccountingSuite.

It has a Cloud Commerce module suitable for Amazon shops to make their sales on any eCommerce website, such as BigCommerce and WooCommerce).

In the Cloud Commerce dashboard, the retailer’s transactions are seamlessly up-to-date every 12 hours following its connection to Amazon via the ShipStation aggregator.

With the Square connection, credit card payments may also be securely processed using this module.

Key Features:

  • Amazon sellers can go to inventory management to keep track of their products across numerous warehouses and bins.
  • A Cloud commerce dashboard is good for managing the infinite number of sales venues
  • Automating workflow process
  • Budgeting for an online business
  • Keep track of all your projects and time spent on them under one roof of the app
  • Timesheet management
  • Appointment scheduling.


  • Exceptional billing abilities
  • Outstanding features for teamwork
  • Affordable pricing plan for amazon sellers
  • ShipStation’s integration gets you an all-in-one solution
  • Accurate reporting is needed.
  • Using the invoicing tool, you won’t have to input figures from the project tracking area, saving you time and effort.


  • The dashboard has a lot of clutter that is more challenging to navigate
  • Take some time to adapt to software learning
  • No applications for both desktop and mobile devices.

7. Denali Business (From $1999 Per Month)

Small to medium-sized Amazon sellers will find Denali Business from Cougar Mountain Software, an excellent accounting system. Those that have to deal with the difficulties of managing inventories across many locations would benefit most from using this cloud-based technology.

Accounts receivable tracking is one of Denali Business’ features for Amazon merchants.

Using Denali Business’ interface with the Amazon marketplace allows their sellers to keep track of all their customers’ transactions for as long as they like.

More than that, it also enables them to build a comprehensive customer history that they can use to make more targeted sales.

A simple connection to the retailer’s bank is all that is required for Denali Business’s Bank Reconciliation feature to keep tabs on and manage transactions.

Sellers may reconcile bank statements instantly rather than spending hours going via the transaction system.

Key Features:

  • Secure Audit Trail that every transaction has been automatically backup every time it is updated
  • The calculation is performed based on GAAP
  • User Permission to monitor before accepting new users for data loss prevention
  • Automated for workflow in the automobile repair shop
  • Scheduled appointments in the app to reserve for auto repair clients
  • App for desktop is available.


  • Excellent bank reconciliation function
  • All packages are easily integrated and customized, which is best for amazon sellers
  • Exceptionally strong financial management software
  • Good inventory control across multiple locations
  • Ability to report troublesome consumers.


  • This does not apply to mobile devices.
  • Pricey
  • Take a longer time to learn about software
  • Because it’s not completely cloud-based, access may be a problem
  • Not applicable to mobile devices.

8. Kashoo (From $27 Per Month)

Kashoo is a cloud-based accounting solution for Amazon startup owners that needs the straightforward and full control that comes with handling their own financial records. It gives Amazon sellers the opportunity to manage their stores in the manner in which they see fit, allowing them to do so whenever, wherever, and on whatever smartphone they use.

Collecting information is a very straightforward process. The users can customize invoices and integrate them into the mail.

In addition, it is simple for them to organize the workflow and streamline the payment process.

Key Features:

  • A cloud-based solution, web-based
  • The capacity to submit bills and monitor expenditures
  • Show P/L statement
  • Provide ease-to-use balance sheet and income statement for amazon sellers
  • Cash management
  • Offers general ledger
  • Provide different currency options to bill customers.


  • Extremely user-friendly
  • Intuitive integration with payment processors accessible for amazon sellers
  • One-time fee for all features
  • Responsive and supportive customer service.


  • Limited template for invoices
  • Inadequate billing tools for amazon sellers
  • Enables basic reporting only.

9. A2X (From $19 Per Month)

Another accounting solution for Amazon sellers that is cloud-based is A2X. A2X will help business owners to keep records of their purchases and sales. This accounting system is ready to connect to QuickBooks, Sage, and Xer, allowing owners to optimize their back-end operations and unleash the potential in the e-commerce industry.

With the platform, users are able to obtain information on their financial reports every month, such as expenses and sales. Also, other reports, including profit margin, inventory, and taxes, are included.

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Key Features:

  • Allow amazon sellers with full and secure authorizations
  • Provide general ledger along with balance sheet and income statement
  • Integration with other software
  • Monitor eCommerce and cashflow
  • Features Profit and Loss statement
  • Import and export data
  • Provide a comprehensive evaluation of the product’s worth and sales figures in order to determine its profitability.


  • Fast transaction export
  • Easy to organize the files
  • Provide highly accurate data processing
  • Applicable for every eCommerce webmaster, especially amazon sellers
  • Allows multiple currency options.


  • The feature set is limited for amazon sellers
  • Mobile apps are not available for downloads
  • Only basic reports are available.

10. TaxCloud ($10 per month)

TaxCloud is a quality tax cloud-based solution that allows Amazon sellers to monitor tax compliance and management from anywhere. With this tool, you may compute sales tax for any US addresses, as well as complete the necessary paperwork and send it off to the appropriate state or local government agency for payment.

Moreover, tax reports, payments handling, and processes may all be generated using the system, which is used by workers.

It works particularly well for Amazon sellers and other eCommerce websites of a medium or small scale.

Most merchants use Shopify, BigCommerce, or other similar platforms to run their own websites while simultaneously listing the product sales on eBay, Etsy, and Amazon marketplaces.

Key Features

  • Provide multi-store and channel marketing
  • Feature with address validation
  • Amazon sellers can track tax compliance via cloud-based software
  • Easily export and import any data
  • Management on tax exemption
  • Inventory, orders, and returns management.


  • All sales tax operation is streamlined
  • Both the user interface and the reporting system are much better than other software
  • Resourceful and time-saving application
  • Designed for scalability across other accounting platforms
  • Budget cloud-based software for businesses, especially amazon sellers.


  • Does not support mobile devices
  • The setup procedure is quite demanding
  • Lack of responsiveness and customer support.

Benefits of Using The Best Accounting Software for Amazon Sellers

As the owner of Amazon sellers, you would be annoyed with every little expense and sales on your accounting statement.

Things like reports or invoices are really time-consuming. On top of that, you are likely to encounter many manual errors.

Therefore, by using the right accounting software, all Amazon sellers would save a lot of money and time on those little matters.

Optimize Amazon seller COGS

Cost of goods sold (COGS) is a fundamental attribute in the accounting software that is used by all Amazon sellers or eCommerce websites.

The feature allows users to include extra expenditures like listing fees, taxes, storage fees, production costs, and procurement costs.

The cloud-based accounting solution will sync the Amazon account and download all essential sale figures, which will remove the manual process of matching data.

For eCommerce sellers, estimating the cost of goods sold takes a lot of time and procedure. You must include all expenditures involved in creating or purchasing the things you have sold.

Moreover, the business producing and selling a wide range of products will consider this procedure considerably more difficult.

Therefore, the cloud-based accounting software for Amazon sellers will support and provide an accurate cost of goods sold for better inventory control.

COGS must be reported on company tax returns for the sellers. In order to assess earnings after the goods have been sold, the product’s cost is subtracted from its value and added to sales revenue.

Get Real-Time Information About How The Amazon Business Is Doing

By acquiring a cloud-based accounting system for Amazon sellers, the business owners will be able to access a real-time view of the business’s financial status at the current stage.

Furthermore, the solution is to help the users to follow up with their financial status in order not to miss anything during the operation period. Doing so prevents operating loss at some points.

By always having updated financial status, the Amazon sellers are also able to connect their Amazon FBA accounts directly. By doing so, they will be able to obtain more precise data on inventory, labor costs, supplies, and so forth.

With all the relevant data, users can stick to their financial plan and spot problems prior to any errors happening.

Do Not Mix Up Your Business and Personal Finances

It will be attainable for Amazon sellers who use accounting software to segregate their personal and corporate funds.

When it comes to tax time or evaluating profitability,  sellers must keep their business and personal accounts separate.

New Amazon sellers, who use their own credit cards to make company transactions, may find it challenging to comply with this requirement.

It is easy to become bogged down in your personal costs and lose track of your company activities. An organization audit will need the disclosure of complete and correct financial data.

You should maintain two different bank accounts to minimize your legal exposure and manage your tax and business expenses.